PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028065702.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29431.4 Da    PI: 10.1041
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028065702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.8e-312776150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_028065702.1 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 76
                    79***********************************************8 PP
2K-box110.91.4e-36971916100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + s++e +a+ +qqe+akL+ +i nLq+++Rh+ Ge+L sLs+++L++Le +Le+++++iRskKnell+++ie +qk+e +l+++n++Lr+k++e
  XP_028065702.1  97 TGSVSELNAQFYQQEAAKLRVQIGNLQNSNRHMRGESLCSLSMRDLKNLEGRLERGISRIRSKKNELLFAEIELMQKREIDLHNNNQYLRAKIAE 191
                     3448999*************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MEFQNQSMDV SRLSPQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALIVFSTRG RLYEYANNSV KATIERYKKA CSGPSNTGSV SELNAQFYQQ EAAKLRVQIG  120
NLQNSNRHMR GESLCSLSMR DLKNLEGRLE RGISRIRSKK NELLFAEIEL MQKREIDLHN  180
NNQYLRAKIA ENERAQQQMS LMPGGPEYEL MPSQSFDARN YLQMNGIQQQ QPQQQQPPNH  240
HHYSRHDQTA LQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-123MIKC_MADS family protein