PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028068496.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 332aa    MW: 37739.3 Da    PI: 6.3063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028068496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++ +G+ +W+  ++  g++R++k+c++rw +yl
   XP_028068496.1 14 KGPWTPEEDQKLIQYIQIHGPANWRNLPKNAGLHRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding543.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e ++++++ +G++ W++Ia++++ gRt++++k++w+++
   XP_028068496.1  67 RGRFSFEEEETIIQLHRIMGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MGRSPCCEKS GVKKGPWTPE EDQKLIQYIQ IHGPANWRNL PKNAGLHRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHRIMGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRF DLLDLSSILS STQLNLSNLL GLQTLMNPEL LRLASTLLGS HNENPEMLLQ  180
KHQENQLFNT HLQNQTPIQE FPPCSSSSVP CTSFIDQTQL IQGIEMGQFS TNLTDLSCQN  240
SQENMNLPYY GGYNNVSDLS DNSTFQSMNN SSNTSQNFTF DSVMSTPISS PTPLNSSSTF  300
INGSSTEDER ESYCSNMLKF EIPEGLDFND FM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-92MYB family protein