PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028068984.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 27376.2 Da PI: 8.651

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028068984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.8	2.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA+EL +LCdaev +iifsstgklye+ s XP_028068984.1 10 RIDNTTSRQVTFSKRRSGLLKKAKELAILCDAEVGLIIFSSTGKLYEFTS 59 8***********************************************75 PP
2	K-box	84.5	2.3e-28	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ + +q+e+a L+++++nLq+++R+l+Ge+L Ls+k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L kk+ XP_028068984.1 81 NQVSDVKFWQREAAILRQQLHNLQENHRQLMGEELYGLSVKDLQNLENQLEMSLQGVRMKKEQILTDEIRELNQKGNLIHQENVELYKKV 170 677889*********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MGRGKIVIRR IDNTTSRQVT FSKRRSGLLK KAKELAILCD AEVGLIIFSS TGKLYEFTST 60 SMKSVIERYN KSREENHQLH NQVSDVKFWQ REAAILRQQL HNLQENHRQL MGEELYGLSV 120 KDLQNLENQL EMSLQGVRMK KEQILTDEIR ELNQKGNLIH QENVELYKKV NLIHQENMEM 180 YKKVYGTRDV IAVTENTQNP YGFSIGDDSC VPIHLQLSQP EHQIHEIPTS ETRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-107	MIKC_MADS family protein