PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028068985.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 221aa MW: 25617.1 Da PI: 8.6673

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028068985.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86	2.2e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA+EL +LCdaev +iifsstgklye+ s XP_028068985.1 10 RIDNTTSRQVTFSKRRSGLLKKAKELAILCDAEVGLIIFSSTGKLYEFTS 59 8***********************************************75 PP
2	K-box	84.1	3.1e-28	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ + +q+e+a L+++++nLq+++R+l+Ge+L Ls+k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L kk+ XP_028068985.1 81 NQVSDVKFWQREAAILRQQLHNLQENHRQLMGEELYGLSVKDLQNLENQLEMSLQGVRMKKEQILTDEIRELNQKGNLIHQENVELYKKV 170 677889********************************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MGRGKIVIRR IDNTTSRQVT FSKRRSGLLK KAKELAILCD AEVGLIIFSS TGKLYEFTST 60 SMKSVIERYN KSREENHQLH NQVSDVKFWQ REAAILRQQL HNLQENHRQL MGEELYGLSV 120 KDLQNLENQL EMSLQGVRMK KEQILTDEIR ELNQKGNLIH QENVELYKKV YGTRDVIAVT 180 ENTQNPYGFS IGDDSCVPIH LQLSQPEHQI HEIPTSETRS R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-98	MIKC_MADS family protein