PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028071315.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 755aa MW: 87489.2 Da PI: 9.0726

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028071315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.9	1.1e-25	36	124	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +Y+++vGFs+r+ + ks ++geit+rtfvCs+eg+++++k++ + ++ trt+C+a++ +k+++ +gk+ v++l++ HnH+l+ XP_028071315.1 36 DFYASYGRRVGFSIRRGYAAKS-KSGEITSRTFVCSREGYKKPDKRD-CRVKNAGLDTRTDCRASMSIKLNRqTGKYWVINLVETHNHPLV 124 6******************9.7888*************999.999999************999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence
MDDLAIATQM SVHGKDDVQS KRTIRVEFDS EQAAYDFYAS YGRRVGFSIR RGYAAKSKSG 60 EITSRTFVCS REGYKKPDKR DCRVKNAGLD TRTDCRASMS IKLNRQTGKY WVINLVETHN 120 HPLVVGVSPD QKNYLRTKRQ RMMAFGEAGI ILKYFQNQRL QDPTFFYAVQ LDSEEKITNV 180 LWADTRMIMD YGKFGDVVAF NTTYKLDREN RPFVLFIGFN NHQETIVFGA ALMYDDTVDS 240 YVWLFQTFLE AMSNKHPYTI FTDQDATMAR AISFVMPNTY HRLCTWHIKQ NALKHVNSIF 300 KGPGGVSGVL EKFMNDYEGV EEFLTAWKAM LDEYGVYNNT WLRSIFELKE KWVRAYVKWG 360 WSAGMKSTQL SESLNADLKD CLRSDYNLVQ FFTHFERMLN ENRYKECESE YALSYKLSDI 420 IKVPVQMLIQ AGTIYTRAIF EEFQDQYVGA LELCITNRAQ GVNCLFYTVT AYKHVRIHQV 480 WMDRNGYVTC CCRLFEMKGI LCSHVIKVLK DEMNIMEIPS HYILKRWTRK ARAEMIQDFL 540 GCNSEVDPKL EQSSRYRSLC SLFIKILSRA SELEETYKMS VEHGKNLLKL VEDMLESHVN 600 DQTLDTSRSS SSFVSEDNDK GGCMENKNVT QAKGLKKKIV SHYGKRRRYK RILEKALVLA 660 RKRKKFRQAV QIPPNVLPYL MSQCGNVPNS MPWIWNGMPQ YTNFQALCQG PFVNYVIQPS 720 QRSVSTHCSQ VVNLNIGDNR HTPANSEHLG DKPTT

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence

MDDLAIATQM SVHGKDDVQS KRTIRVEFDS EQAAYDFYAS YGRRVGFSIR RGYAAKSKSG  60
EITSRTFVCS REGYKKPDKR DCRVKNAGLD TRTDCRASMS IKLNRQTGKY WVINLVETHN  120
HPLVVGVSPD QKNYLRTKRQ RMMAFGEAGI ILKYFQNQRL QDPTFFYAVQ LDSEEKITNV  180
LWADTRMIMD YGKFGDVVAF NTTYKLDREN RPFVLFIGFN NHQETIVFGA ALMYDDTVDS  240
YVWLFQTFLE AMSNKHPYTI FTDQDATMAR AISFVMPNTY HRLCTWHIKQ NALKHVNSIF  300
KGPGGVSGVL EKFMNDYEGV EEFLTAWKAM LDEYGVYNNT WLRSIFELKE KWVRAYVKWG  360
WSAGMKSTQL SESLNADLKD CLRSDYNLVQ FFTHFERMLN ENRYKECESE YALSYKLSDI  420
IKVPVQMLIQ AGTIYTRAIF EEFQDQYVGA LELCITNRAQ GVNCLFYTVT AYKHVRIHQV  480
WMDRNGYVTC CCRLFEMKGI LCSHVIKVLK DEMNIMEIPS HYILKRWTRK ARAEMIQDFL  540
GCNSEVDPKL EQSSRYRSLC SLFIKILSRA SELEETYKMS VEHGKNLLKL VEDMLESHVN  600
DQTLDTSRSS SSFVSEDNDK GGCMENKNVT QAKGLKKKIV SHYGKRRRYK RILEKALVLA  660
RKRKKFRQAV QIPPNVLPYL MSQCGNVPNS MPWIWNGMPQ YTNFQALCQG PFVNYVIQPS  720
QRSVSTHCSQ VVNLNIGDNR HTPANSEHLG DKPTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	645	665	KRRRYKRILEKALVLARKRKK
2	646	666	KRRRYKRILEKALVLARKRKK
3	661	665	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1 family protein