PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028071924.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 202aa    MW: 21992.2 Da    PI: 8.1454
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028071924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39101111101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l
  XP_028071924.1  10 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQL 104
                     7*************************99******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_028071924.1 105 MQVKSQL 111
                     *999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MATGGGAGSP CGACKFLRRK CASDCIFAPY FCSEQGPARF AAIHKVFGAS NVSKLLLHVP  60
VPDRCEAVVT IAYEAQARIR DPVYGCVAHI FALQQQVACL QAQLMQVKSQ LAQNVIDSRN  120
AESQWPGNNM VGMPAFQTYP NCMNSSISAQ SSLESIVHGI DGMGMQEVQS RDELSFQPYS  180
KKRPSQTDLG ELQALALRMM RN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-57LBD family protein