PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028071925.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 232aa    MW: 25879.9 Da    PI: 5.8604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028071925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.17.2e-3971071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa++Cv+apyf++eq + +f ++hk+FGasnv+kll++lp ++r +a++++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_028071925.1   7 PCGACKFLRRKCARGCVFAPYFCHEQsATHFSAIHKVFGASNVSKLLSHLPVSDRCEAAATISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 101
                     7***********************99789****************************************************************** PP

          DUF260  95 allkee 100
                     a lke+
  XP_028071925.1 102 ACLKEQ 107
                     *99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MTSSGSPCGA CKFLRRKCAR GCVFAPYFCH EQSATHFSAI HKVFGASNVS KLLSHLPVSD  60
RCEAAATISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LACLKEQMAW ARNFINGSTG  120
TANPNERLCG KLASYSQGVF QSENSMMAQF DPNLISNFGN NPYCENSFMN PNSIGNYENQ  180
IIPEENKSFT SFEETSQYSM DSLDMQTNGR HEWAFQDDAD ELKLMAFGYI QH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-57LBD family protein