PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028071974.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 207aa MW: 23619.2 Da PI: 6.5072

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028071974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.7e-12	84	106	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff+rt tCk+G +CkF+H+ XP_028071974.1 84 EDCPFFLRTRTCKFGLNCKFNHP 106 89********************9 PP
2	zf-CCCH	29.2	1.6e-09	135	159	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ G CkyG +C+++H++ XP_028071974.1 135 QTECKNYLTPGGCKYGKSCRYNHSK 159 679********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MWRETDMETF EANSIFALKQ TSQSELGFAS SDSVTHFTTT QSQSTLDSDC FTDESLSQKF 60 ENIGLRSNED ESSNESHPLR PYAEDCPFFL RTRTCKFGLN CKFNHPVRRT NQKAGKEKEK 120 DTGKAKEGFS EKPEQTECKN YLTPGGCKYG KSCRYNHSKD ESEIAPPELN FLGLPIRLGE 180 KEWVARHAGP HAKWFLWIWS SLQVSPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	8e-31	C3H family protein