PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028072265.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92132 Da    PI: 6.2112
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028072265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-182784457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_028072265.1 27 YVRYTTEQVEALERVYIECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84
                    5789****************************************************97 PP
2START159.32.9e-501653712203
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l 
  XP_028072265.1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELV 258
                     7899******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+  l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_028072265.1 259 YTQTYAPTTLAPaRDFWSLRYTTNLDNGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 353
                     **************************************99999998999********************************************** PP

                     HHHHHHHHHHHHHHTXXX CS
           START 186 ksglaegaktwvatlqrq 203
                     +s+ + ++k++ a l++ 
  XP_028072265.1 354 ESSKVVAQKMTIAGLRYI 371
                     *************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    
MAMVMAQQQH RESSSGSISK HLDAGKYVRY TTEQVEALER VYIECPKPSS LRRQQLIREC  60
PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLTA MNKLLMEEND RLQKQVSQLV  120
CENGYMRQQL QSASAATTDA SCESVVTTPQ HSLKDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISHSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELVYT QTYAPTTLAP ARDFWSLRYT TNLDNGSLVV CERSLSGSGA  300
GPNAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHMNL EAWSVPEVLR PLYESSKVVA  360
QKMTIAGLRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL NRGFNDAVNG FNDDGWSILN  420
CDGAEDVIVA INSTKNLVGT SSHSNSLALL GGILCAKASM LLQNVPPAVL VRFLREHRSE  480
WADFNVDAYS AAALKTNSFA YPGMRPTRFT GSQIIMPLGH TIEHEEMLEV IRLEGHSLAQ  540
EDAFVSRDIH LLQICSGVDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKSSD  600
TQDTLNAQRT LDLTSSLEVG PVTNHASGDG SNTRSVLTIA FQFPFENSLQ DNIAAMARQY  660
VRSVISSVQR VAMAISPSGL SPTMGPKLSP GSPEALTLAH WICQSYSYHL GSELLRSDSI  720
GGDSILKNLW HHPDAILCCS LKSLPVFVFA NQAGLDMLET TLVALQDITL DKIFDESGRK  780
VLYSDFAKIM QQGFACLPAG ICMSTMGRHI SYEQAIAWKV LAAEENTVHC LAFSFVNWSF  840
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein