PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028072311.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 170aa    MW: 19746.3 Da    PI: 7.0166
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028072311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.41.8e-3661051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk lrr+C++dCvla yfpa+++++f +vhk+FG+snv+ +l++lp + r +a++++v+eA  r++dP+yG++++i++lqqq+ q++ e+a
  XP_028072311.1   6 RCAACKSLRRRCSQDCVLALYFPANNAERFSCVHKIFGTSNVTMMLEQLPIQSRAEAADCMVMEASSRIQDPIYGCTKTIFELQQQIIQTQYEIA 100
                     6*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     +++ +
  XP_028072311.1 101 KIQCQ 105
                     98865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MSNSTRCAAC KSLRRRCSQD CVLALYFPAN NAERFSCVHK IFGTSNVTMM LEQLPIQSRA  60
EAADCMVMEA SSRIQDPIYG CTKTIFELQQ QIIQTQYEIA KIQCQIAICC AQQQMNNHQQ  120
LVNQQNQYQQ QQPPWMMMNA NHNHQQQQEE EQLHLDHHQQ LSGSHHHPQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.11e-36LBD family protein