PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028072399.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family B3
Protein Properties Length: 267aa    MW: 30718.5 Da    PI: 10.3913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028072399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1611101198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkvl     +++ +l++p  f +++gg+ +++  ++    + rsW+v++  +  ++r ++ +GW  Fv++n L+ gDf++F+++g+s+f  +v 
  XP_028072399.1  11 FFKVL--IGDFSN-QLRIPPAFKKHFGGSVPQN-CIIWSCAEERSWNVNI-RKVDDDRLLFHQGWAAFVRDNSLEMGDFLLFRYEGDSQF--HVD 98 
                     66666..555555.6*******86665554453.5777779*********.3667777****************************9999..887 PP

                     EE- CS
              B3  96 vfr 98 
                     ++ 
  XP_028072399.1  99 MYG 101
                     765 PP
2B343.17.5e-14177265699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ +l ++ l +  +f++++ +k  +++tl+++    + W v+l    +++r +l +G   F+k++ L++gD++vF+l++r++  l+v++fr+
  XP_028072399.1 177 MRPTNLHNRYLNIAMSFVNTYIKK--SKTTLKFQI-LDKLWPVNL--ISNQRRALLCGGFPAFAKEQSLQAGDVCVFELIDRDDHVLKVSIFRN 265
                     4777888889********999444..344566554.4599*****..888888999************************999999*****996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MKMAPRRAPS FFKVLIGDFS NQLRIPPAFK KHFGGSVPQN CIIWSCAEER SWNVNIRKVD  60
DDRLLFHQGW AAFVRDNSLE MGDFLLFRYE GDSQFHVDMY GKNCCQKLAA ADPANQTDVL  120
REKIQKKSSA ARQRIIRRSS WSIVAAEAKQ EKGRGRALEA AEKFMSTSNY PSFIRVMRPT  180
NLHNRYLNIA MSFVNTYIKK SKTTLKFQIL DKLWPVNLIS NQRRALLCGG FPAFAKEQSL  240
QAGDVCVFEL IDRDDHVLKV SIFRNMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-16B3 family protein