PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072699.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 300aa MW: 33214.8 Da PI: 4.9607

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.8	9.1e-17	21	95	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ +fdfl +iv + XP_028072699.1 21 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLQRGAKTVNSLHLKQCVQSFSVFDFLREIVSK 95 8**********************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MRKKLDTRFP AEKGGKSKEK ARIKKIMQAD EDVGKIAMAV PLLVSKALEL FLQDLCDRTY 60 EITLQRGAKT VNSLHLKQCV QSFSVFDFLR EIVSKVPDLG GSDAAGEDRS AAKRRKIADD 120 EEHDSDDEMK RGRTHETGHT SSSGRGRGRG RGRGRGRGRT VERELPVHNE KFEDDPDISQ 180 HNEKEKQNDE RLDNGAVPEC SKESIAVSKN AEATARNFDL NVGLDESEDS TTVLASTTPA 240 VLAATTPAST SSTKPALEMK HEEYPGWSLA DMEKMAIDPV QLANLNGRID EEEEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	154	RGRGRGRGRG
2	145	155	RGRGRGRGRGR
3	147	156	RGRGRGRGRG
4	147	157	RGRGRGRGRGR
5	149	158	RGRGRGRGRG
6	149	159	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-62	NF-YC family protein