PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072708.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27444.4 Da PI: 8.4675

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.4	5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+s+ XP_028072708.1 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGKLYEFSN 59 79***********************************************95 PP
2	K-box	75.1	1.9e-25	78	172	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s++++++++ ++l++e+ L ++ie Lq ++R+llG++Les + eLqq+++q+e+sl+kiR++K+++++e+ie+l++ e+ l een +Lr+kl+ XP_028072708.1 78 SSNNAAQENLQHLKEEAVSLSEKIELLQVSKRKLLGDGLESSCIDELQQVQDQIEQSLSKIRARKTQVFKEKIEQLKEEERILTEENAKLREKLK 172 455689999***********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGKLYEFSNS 60 SINKTIDRYQ KNAKDLGSSN NAAQENLQHL KEEAVSLSEK IELLQVSKRK LLGDGLESSC 120 IDELQQVQDQ IEQSLSKIRA RKTQVFKEKI EQLKEEERIL TEENAKLREK LKCDQMELPC 180 LAFAQEVPTQ REISDVETEL FIGPPDEQRT TRWLIQSSTA INGMRLRYKK PESFPGFEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-78	MIKC_MADS family protein