PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072709.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 230aa MW: 26368.2 Da PI: 9.2455

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.5	4.7e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+s+ XP_028072709.1 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGKLYEFSN 59 79***********************************************95 PP
2	K-box	54.6	4.9e-19	81	163	5	85
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne..llleqieelqkkek 85 s++++++++ ++l++e+ L ++ie Lq ++R+llG++Les + eLqq+++q+e+sl+kiR++K++ +l+e+ +l++k k XP_028072709.1 81 SSNNAAQENLQHLKEEAVSLSEKIELLQVSKRKLLGDGLESSCIDELQQVQDQIEQSLSKIRARKTQerILTEENAKLREKLK 163 455689999********************************************************975578888888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGKLYEFSNS 60 RRLSINKTID RYQKNAKDLG SSNNAAQENL QHLKEEAVSL SEKIELLQVS KRKLLGDGLE 120 SSCIDELQQV QDQIEQSLSK IRARKTQERI LTEENAKLRE KLKCDQMELP CLAFAQEVPT 180 QREISDVETE LFIGPPDEQR TTRWLIQSST AINGMRLRYK KPESFPGFEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	1e-67	MIKC_MADS family protein