PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028072944.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 220aa    MW: 24294.1 Da    PI: 4.4675
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028072944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42e-377105198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv+ap+f  ++ +++fa+vhk+FGasnv+kll++lp ++r++a+ ++ yeA ar++dP+yG+v+ i++lqqq+++l++e+
  XP_028072944.1   7 SCGACKFLRRRCTSECVFAPHFNYDEaAAHFAVVHKVFGASNVSKLLTNLPMNDRREAAITISYEALARMHDPIYGCVSQIFALQQQVASLQEEI 101
                     6*********************998868******************************************************************9 PP

          DUF260  95 allk 98 
                     ++l+
  XP_028072944.1 102 ETLG 105
                     9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MTGLGSSCGA CKFLRRRCTS ECVFAPHFNY DEAAAHFAVV HKVFGASNVS KLLTNLPMND  60
RREAAITISY EALARMHDPI YGCVSQIFAL QQQVASLQEE IETLGIQMAN LTVDVSSCGS  120
SQATNQFNNE LWVYSQQHND MTNVQNFLSQ QDSLLSHGGD TEGNHDLYTQ MNIQFPCLGL  180
EDQTSSVPYP DLSLLERLLE GIDQGIYASC PWIVNGSNTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-43LBD family protein