PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072947.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 726aa MW: 84190.5 Da PI: 7.7345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	5e-24	51	138	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Yne+++ +GFsvr+++s+k k++++it+r+fvCskeg+r+e++++ k++++r++tr gCka ++v ++k ++k+evt++ +HnH+l XP_028072947.1 51 IYNEFGRITGFSVRIEYSNKCKKTERITSRRFVCSKEGFRHEDNRD-IKTKKPRQKTRPGCKALMTVVLNKkSQKYEVTDCFDDHNHPL 138 7****************************************999.99***************9999*************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MDESMRTEAF EPPWMRDLLG PNRDANPNLN IPDYKPRIGL EFDSLDDAKK IYNEFGRITG 60 FSVRIEYSNK CKKTERITSR RFVCSKEGFR HEDNRDIKTK KPRQKTRPGC KALMTVVLNK 120 KSQKYEVTDC FDDHNHPLHI QECVHLMPSQ RKITKAQAIE ADLAEASGIR LRSSFELAFR 180 QTGGRECLGF TRQDLKNYLW TKRQRDLKFG EAGSLLAYFV DKSMKDSSFH FNMQLDVEEQ 240 ITNIFLADPK MIIDYSMFGD LVSFDTTYRT HKDYRPLAVF LGFNNYRKIG AALLYDETVA 300 SFEWLFRSFF DAMSGKKPKT FFTDQDPAMA KAISLVMPDT FHRICMWHMK QNAIKHLGSK 360 YIGDHGGIGA ELSKFIYNYE DEECLCIAWE EMLDRFDVHD NSWLPTIYGV REKWAKPYVM 420 TVWSAWANTT QVSKSFNAKR RNFLQSDLGI VHFFKHFERV INDINHIELE CEYASRQKLP 480 RIGLPIPMLI NIGDFYTNQI LELFKIEYLN SLRDFAWKQD ESNLSHDYMV KTPDEPMVRE 540 VTANPQGPQV SCTCRLFERC GILCSHAFKG LDMMNIKEIP ESYLLKRWAK KSKDGLVQEN 600 NRCVAKQVVA DLDMNAHHRM LCPSLIKLGC RAAESKETTC MLMKNSIEMA KKIDDVLSKQ 660 ASVNEQENDA HAPSCPQKSS EKVAEENQPH NPHDNMPLYV PVFEDKNMDQ VISIHRVLRC 720 PIPCHG

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MDESMRTEAF EPPWMRDLLG PNRDANPNLN IPDYKPRIGL EFDSLDDAKK IYNEFGRITG  60
FSVRIEYSNK CKKTERITSR RFVCSKEGFR HEDNRDIKTK KPRQKTRPGC KALMTVVLNK  120
KSQKYEVTDC FDDHNHPLHI QECVHLMPSQ RKITKAQAIE ADLAEASGIR LRSSFELAFR  180
QTGGRECLGF TRQDLKNYLW TKRQRDLKFG EAGSLLAYFV DKSMKDSSFH FNMQLDVEEQ  240
ITNIFLADPK MIIDYSMFGD LVSFDTTYRT HKDYRPLAVF LGFNNYRKIG AALLYDETVA  300
SFEWLFRSFF DAMSGKKPKT FFTDQDPAMA KAISLVMPDT FHRICMWHMK QNAIKHLGSK  360
YIGDHGGIGA ELSKFIYNYE DEECLCIAWE EMLDRFDVHD NSWLPTIYGV REKWAKPYVM  420
TVWSAWANTT QVSKSFNAKR RNFLQSDLGI VHFFKHFERV INDINHIELE CEYASRQKLP  480
RIGLPIPMLI NIGDFYTNQI LELFKIEYLN SLRDFAWKQD ESNLSHDYMV KTPDEPMVRE  540
VTANPQGPQV SCTCRLFERC GILCSHAFKG LDMMNIKEIP ESYLLKRWAK KSKDGLVQEN  600
NRCVAKQVVA DLDMNAHHRM LCPSLIKLGC RAAESKETTC MLMKNSIEMA KKIDDVLSKQ  660
ASVNEQENDA HAPSCPQKSS EKVAEENQPH NPHDNMPLYV PVFEDKNMDQ VISIHRVLRC  720
PIPCHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	586	594	KRWAKKSKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-93	FAR1 family protein