PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028073186.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 836aa    MW: 93233.1 Da    PI: 7.0207
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028073186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23164265199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      +  ++ +++l  +d++g++W++k+i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_028073186.1 164 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-RQPPTQELAAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 255
                     99*****************************73.3334459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_028073186.1 256 GELRVGVRRA 265
                     99*****996 PP
2Auxin_resp1125.8e-37290372183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha +t++ F+v+Y+Pr+s++eF+v++++++ ++k+++svGmRfkm+fe+e+++e+r++Gt++g++d+d+ rW +SkWr+Lk
  XP_028073186.1 290 AWHAYTTGTFFTVYYKPRTSPAEFIVPFDQYMGSVKSNYSVGMRFKMRFEGEEAPEQRFTGTIIGIEDADTKRWAESKWRCLK 372
                     79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    
MASSELSFKG NARGGGECFS SGYSDHNDGA GLSRSASEAA PKGYSTVSGA GKVDPETALY  60
TELWRACAGP LVTVPREGQR VFYFPQGHIE QVEASTNQVA DQEMPMYNLP SKILCRVLNV  120
QLKAEPDTDE VFAQVTLLPL KEDENEAEKE PMPPPPPRFH VHSFCKTLTA SDTSTHGGFS  180
VLRRHADECL PPLDMSRQPP TQELAAKDLH GNEWRFKHIF RGQPRRHLLQ SGWSVFVSSK  240
RLVAGDAFIF LRGENGELRV GVRRAMRQQA NIPSSVISSH SMHIGVLATA WHAYTTGTFF  300
TVYYKPRTSP AEFIVPFDQY MGSVKSNYSV GMRFKMRFEG EEAPEQRFTG TIIGIEDADT  360
KRWAESKWRC LKVRWDENST IPRPERVSPW KIEPALTTAA LNPLPMPRLK RPRSSMVPSS  420
PDSSVLTREG SSKMTMDPSP VNGFSRVLHG QEFSTLRGTF AESNGSDSTE KPVVWPPSLD  480
DEKIDMVSPS QKYASDKWLS SVRHDSTFTD LFSGFGAQTN SSHKSIKVNL PDREGKFNFL  540
ASNWSVTPSA LSLNLLDSSM KAHVQSSDVP CHSRDVRYGG FTEYSLLTGQ KPEQHQGNWS  600
REPPLQSYLH IPTQSRGLMP RPVLVQQSEA VKPKDGNCRL FGIPLISNHV TTEPAHSHKT  660
TIETDQRSEQ IKGVNVADQP LPSVEQEKPS QTCQPLVRDC LGKFQGGSTR SFTKVHKQGI  720
ALGRSVDLTK FSNYEELIAE LDQLFEFNGE LKARNKNWLI VFTDDEGDMM LVGDDPWPEF  780
CGMVRKINIY TREEVQRMNP GTLNSKGEEN SLLGEGMDGK EMKNTLLPTV SVPEKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein