PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073238.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARR-B

Protein Properties

Length: 653aa MW: 72464.2 Da PI: 5.9487

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.4	3.3e-28	201	254	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt +LH++Fv av+qL G+++A+Pk+il++m+v+ Lt+e+v+SHLQkYRl XP_028073238.1 201 KPRVVWTVDLHRKFVAAVNQL-GIDEAVPKRILDMMNVEKLTRENVASHLQKYRL 254 79*****************.******************************8 PP
2	Myb_DNA-binding	38.6	2.5e-12	203	253	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT +++ ++v av+qlG + +k+I +m+ +++t++++ s++qky+ XP_028073238.1 203 RVVWTVDLHRKFVAAVNQLGIDeaVPKRILDMMNvEKLTRENVASHLQKYR 253 678******************************99***********7 PP
3	Response_reg	79.1	1.5e-26	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l+k +y +v++++++ al+ l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ + + G XP_028073238.1 20 VLAVDDDPICLRVLETLLRKCQY-HVTTTSQAITALKVLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMKGITHG 112 799******************.***********888888***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_028073238.1 113 ACDYLLKPIRIEELKN 128 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MIVDQSFDEP NDRFPMGMRV LAVDDDPICL RVLETLLRKC QYHVTTTSQA ITALKVLREN 60 KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP 120 IRIEELKNIW QHVVRRKKND PKDQNNFDKP HHESEGGQAI TVTGDSDQNS KLNRKRKEQN 180 EDEGDRADDG QNNEDPSMQK KPRVVWTVDL HRKFVAAVNQ LGIDEAVPKR ILDMMNVEKL 240 TRENVASHLQ KYRLYLKRIS CVASQQANIV AALGGADSAY LQMSSLNGFG NYHSMVGSAK 300 FQNPTVGSFS SSGMLDRLNT PAVLGSCGLS LTGMIQSKFQ PVILSGNQNG NTFQGMPTSL 360 EFDQLQHNNG VEHFGDLSTG TNDSMVFPIS GDFLDTNING SSSRNSLHGV PYNPVTLQGH 420 PQPQEIERRG VCGNQSRVSV EEFPSHLPDF ARCTDTWPAI QSSEIQSNSF TSSDFRINMS 480 SIAMDGWSNS HDISSVNSTN AQFPELRTDL KCLATPGLGS NGEQRMNYGM KSGWDHNKLD 540 ASHNPNLMHS PMNSLIPHGV MNSSSQRSDP MNAVGNRNND FRMIGQPNLV DHHLSMQRNG 600 VEQSAMEATV NIKQGYSYNN DDSLEDLVSA MMKQENIRDG DFGCETHSLG TCI

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MIVDQSFDEP NDRFPMGMRV LAVDDDPICL RVLETLLRKC QYHVTTTSQA ITALKVLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP  120
IRIEELKNIW QHVVRRKKND PKDQNNFDKP HHESEGGQAI TVTGDSDQNS KLNRKRKEQN  180
EDEGDRADDG QNNEDPSMQK KPRVVWTVDL HRKFVAAVNQ LGIDEAVPKR ILDMMNVEKL  240
TRENVASHLQ KYRLYLKRIS CVASQQANIV AALGGADSAY LQMSSLNGFG NYHSMVGSAK  300
FQNPTVGSFS SSGMLDRLNT PAVLGSCGLS LTGMIQSKFQ PVILSGNQNG NTFQGMPTSL  360
EFDQLQHNNG VEHFGDLSTG TNDSMVFPIS GDFLDTNING SSSRNSLHGV PYNPVTLQGH  420
PQPQEIERRG VCGNQSRVSV EEFPSHLPDF ARCTDTWPAI QSSEIQSNSF TSSDFRINMS  480
SIAMDGWSNS HDISSVNSTN AQFPELRTDL KCLATPGLGS NGEQRMNYGM KSGWDHNKLD  540
ASHNPNLMHS PMNSLIPHGV MNSSSQRSDP MNAVGNRNND FRMIGQPNLV DHHLSMQRNG  600
VEQSAMEATV NIKQGYSYNN DDSLEDLVSA MMKQENIRDG DFGCETHSLG TCI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-134	ARR-B family protein