PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073468.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 1107aa MW: 124976 Da PI: 9.5721

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.8e-09	325	368	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W + Ed++l++ v++ G ++W Ia +g++Rt+ qc r+q XP_028073468.1 325 PWGKMEDKKLLHIVQERGINNWIEIAVLLGTNRTPFQCLARYQR 368 7*****************************************96 PP
2	Myb_DNA-binding	45.2	2.2e-14	377	420	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ lG +W ++a+t+ gRt+ qc +rw k XP_028073468.1 377 REWTEDEDNKLRAAVEALGESNWQSVASTLE-GRTGTQCSNRWIK 420 68***************************.*********87 PP
3	Myb_DNA-binding	51.1	3.1e-16	430	473	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT++Ed++l+ av ++G++tWk++a+ + gRt qc++rw++ XP_028073468.1 430 GRWTKDEDKRLKVAVMLFGPKTWKKVAKFVL-GRTHVQCRERWFN 473 8***************************9.*********98 PP
4	Myb_DNA-binding	50.6	4.4e-16	482	526	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grWT++Ed +l+ a+ ++G W+++a++++ Rt++qc+ rw +l XP_028073468.1 482 GRWTEDEDSKLKAAISEHGYC-WSKVASCVP-PRTDNQCRRRWKVLL 526 8****************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1107 aa Download sequence
MRPMMRSHGF RQHHPDSLKS STENDLKKLE QVQATNVALE KETSTNVVVD RINVSQGFPD 60 SLDVYNTSQN SESVNEIIPG IWPSGLIEWH QPDEHNLAMI SPRDSSFPKS AQMFVDAIKK 120 NRACQKFLRS KMIQIEARIE ENKKLKQRVK ILKDFQVTCK KRTGRALSQK KDARVQLISA 180 KKPRTNSKVN GKKVSALYYG PDENCHVPIY RMVLTKFPIS LSREKWSDEE RTNLAKGIKQ 240 QLQELLFQKS VDLISDVEGS IEDSNDFGSI VASIRDLDIT PANIRSYLPK VNWERLASMY 300 VTGHSGAECE SRWLNCEDPL INHHPWGKME DKKLLHIVQE RGINNWIEIA VLLGTNRTPF 360 QCLARYQRSL NASILKREWT EDEDNKLRAA VEALGESNWQ SVASTLEGRT GTQCSNRWIK 420 SLHPARQKVG RWTKDEDKRL KVAVMLFGPK TWKKVAKFVL GRTHVQCRER WFNSLDPALN 480 MGRWTEDEDS KLKAAISEHG YCWSKVASCV PPRTDNQCRR RWKVLLPHEV PLLQAARRIQ 540 KAALISNFVD RESERPALGP NDFIPLALTN TVSESENVNL AGKQKRKSRR RSGSKANRKV 600 SRSKRPTKET EISYKEVLLL TDGNEVENFA GEGVISNKRV MKLRPRKKRS YEPNEDVIGN 660 GLEVRQFDGV TKKRRSLGRR KRTFSGRPEV NEIDDSMKER TMEPCSKKNK GTGLTKAHLS 720 AYEDSELLVM TNGEDVGERG GDAIAKNKKE IKPGRRKRKR AEPLDGISGI INSANIVKNK 780 KPSSPHLQDE CTDPTQDHSS SCPDSTPLMI TNGNEVEAFG DNGERKNNTL KLGSRNSKYS 840 RLLQELSEIN DSIEVETLDG CDAIVKKKRV TKQSLKKCSD PNHSFSSESF TETDNEVEAF 900 VGNDATKKRR ASKPHSMSKC TDHIETSGVE NTTLHRKRRA KLQPNQSETT ELVEVSERIS 960 LSQKCSTYVL LDNDNSRASG VCTQERLKRS RTSESCSNHT LEAEDGDDDM TLACFIKNNV 1020 KRRRLKLAEK GNDISSHLED QPGTIAGEIN CGKSRLVAGG TLAFHESLIE PLSIDVEGVF 1080 EDGDDDPSDT SSPPPGFENP IYGRSPS

Sequence ? help Back to Top

Protein Sequence Length: 1107 aa Download sequence

MRPMMRSHGF RQHHPDSLKS STENDLKKLE QVQATNVALE KETSTNVVVD RINVSQGFPD  60
SLDVYNTSQN SESVNEIIPG IWPSGLIEWH QPDEHNLAMI SPRDSSFPKS AQMFVDAIKK  120
NRACQKFLRS KMIQIEARIE ENKKLKQRVK ILKDFQVTCK KRTGRALSQK KDARVQLISA  180
KKPRTNSKVN GKKVSALYYG PDENCHVPIY RMVLTKFPIS LSREKWSDEE RTNLAKGIKQ  240
QLQELLFQKS VDLISDVEGS IEDSNDFGSI VASIRDLDIT PANIRSYLPK VNWERLASMY  300
VTGHSGAECE SRWLNCEDPL INHHPWGKME DKKLLHIVQE RGINNWIEIA VLLGTNRTPF  360
QCLARYQRSL NASILKREWT EDEDNKLRAA VEALGESNWQ SVASTLEGRT GTQCSNRWIK  420
SLHPARQKVG RWTKDEDKRL KVAVMLFGPK TWKKVAKFVL GRTHVQCRER WFNSLDPALN  480
MGRWTEDEDS KLKAAISEHG YCWSKVASCV PPRTDNQCRR RWKVLLPHEV PLLQAARRIQ  540
KAALISNFVD RESERPALGP NDFIPLALTN TVSESENVNL AGKQKRKSRR RSGSKANRKV  600
SRSKRPTKET EISYKEVLLL TDGNEVENFA GEGVISNKRV MKLRPRKKRS YEPNEDVIGN  660
GLEVRQFDGV TKKRRSLGRR KRTFSGRPEV NEIDDSMKER TMEPCSKKNK GTGLTKAHLS  720
AYEDSELLVM TNGEDVGERG GDAIAKNKKE IKPGRRKRKR AEPLDGISGI INSANIVKNK  780
KPSSPHLQDE CTDPTQDHSS SCPDSTPLMI TNGNEVEAFG DNGERKNNTL KLGSRNSKYS  840
RLLQELSEIN DSIEVETLDG CDAIVKKKRV TKQSLKKCSD PNHSFSSESF TETDNEVEAF  900
VGNDATKKRR ASKPHSMSKC TDHIETSGVE NTTLHRKRRA KLQPNQSETT ELVEVSERIS  960
LSQKCSTYVL LDNDNSRASG VCTQERLKRS RTSESCSNHT LEAEDGDDDM TLACFIKNNV  1020
KRRRLKLAEK GNDISSHLED QPGTIAGEIN CGKSRLVAGG TLAFHESLIE PLSIDVEGVF  1080
EDGDDDPSDT SSPPPGFENP IYGRSPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	584	590	QKRKSRR
2	638	649	KRVMKLRPRKKR
3	672	710	KKRRSLGRRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
4	673	682	KRRSLGRRKR
5	679	710	RRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
6	755	760	RRKRKR
7	1021	1025	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	0.0	MYB family protein