PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073731.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 520aa MW: 58750.4 Da PI: 5.441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	346	390	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N+ fe Lr+llP+ +K +Ka+ L+ ++ + sL XP_028073731.1 346 HMISERKRREKLNEMFEALRSLLPPG-----TKKDKASLLTSTTALLTSL 390 8899********************97.....7999999999998777666 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MDSIFELDDE PRANFLQNIV QSFGSIYICL WSYLPQPSNC LIFKDGFYKE ESINQASSSS 60 GSRARRLFDE YILSVFTVEN DCVPGLAFKN NSRFMELKEL DLQRLASVES QLQFYQEARI 120 KSAIFMGCMT GEIELGMSND TQVNLQMEMM NWFPENLSQQ APPRELQHLI DHNRPSSSSS 180 SLRSLSLDSS EVSPFRLNIP SPSYLSEPPT EAPTEQTLRQ LSTSISPLHQ ALQALSQIRN 240 PLFPTPETEE DAIRKAFLSV ISSSPSSSSS SLQSQQNIPP NFQVSEKATS AFNRYRSVLG 300 PSTSMTTRSR RQSIAKRAIT FFRSLDLTRA QEREQGSRPT SSQLHHMISE RKRREKLNEM 360 FEALRSLLPP GTKKDKASLL TSTTALLTSL KDQVVELTRR NQLLEAQLLP RKESSEEVSV 420 LSSNERVRVE VTHVAELTLE EAQIIDLEVI VRGECNVLDL VMQTLEFLKQ VNNVNLMSVE 480 ADTRLVESTS LNRVTLRLKI EGGEWDQSAF QEAVKRIHGG

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MDSIFELDDE PRANFLQNIV QSFGSIYICL WSYLPQPSNC LIFKDGFYKE ESINQASSSS  60
GSRARRLFDE YILSVFTVEN DCVPGLAFKN NSRFMELKEL DLQRLASVES QLQFYQEARI  120
KSAIFMGCMT GEIELGMSND TQVNLQMEMM NWFPENLSQQ APPRELQHLI DHNRPSSSSS  180
SLRSLSLDSS EVSPFRLNIP SPSYLSEPPT EAPTEQTLRQ LSTSISPLHQ ALQALSQIRN  240
PLFPTPETEE DAIRKAFLSV ISSSPSSSSS SLQSQQNIPP NFQVSEKATS AFNRYRSVLG  300
PSTSMTTRSR RQSIAKRAIT FFRSLDLTRA QEREQGSRPT SSQLHHMISE RKRREKLNEM  360
FEALRSLLPP GTKKDKASLL TSTTALLTSL KDQVVELTRR NQLLEAQLLP RKESSEEVSV  420
LSSNERVRVE VTHVAELTLE EAQIIDLEVI VRGECNVLDL VMQTLEFLKQ VNNVNLMSVE  480
ADTRLVESTS LNRVTLRLKI EGGEWDQSAF QEAVKRIHGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	350	355	ERKRRE
2	351	356	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-48	bHLH family protein