PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073853.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 194aa MW: 22946.4 Da PI: 8.9828

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.8e-12	4	41	11	48
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l++ v+++G + W+ Ia++m gR +kqc++rw+++l XP_028073853.1 4 ELIEMVEKYGVRKWSQIAEMMEGGRIGKQCRERWHNHL 41 599*********************************97 PP
2	Myb_DNA-binding	54.5	2.8e-17	47	89	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++Ed++l++ +++ G++ W+ Ia++++ gRt++++k++w+ XP_028073853.1 47 KDTWSEDEDKILIQTHTEVGNK-WAEIAKRLP-GRTENSVKNHWN 89 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MCRELIEMVE KYGVRKWSQI AEMMEGGRIG KQCRERWHNH LRPDIKKDTW SEDEDKILIQ 60 THTEVGNKWA EIAKRLPGRT ENSVKNHWNA TKRRQYSKRK CRTKNPRPSS LLQNYIKSLN 120 LDGKFDINAK NALATEKFEE CSILLDQMPC PPVDDEKSFE MEEVPLDRVH VASFMKREVK 180 KEKDLMEMIT QVNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	KREVKKEKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-65	MYB family protein