PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074828.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28626.5 Da PI: 8.6427

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.9	9.7e-27	21	70	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtf+kRrng+lKKA+EL +LCdaev +iifsst klye++s XP_028074828.1 21 RIDNTTSRQVTFTKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLYEFAS 70 8***********************************************86 PP
2	K-box	78.5	1.7e-26	87	180	8	98
K-box 8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ ++ + +q+e++ L+++++nLq++ R+l+Ge+L Ls+ +Lq+Le+qLe sl+ +R +K+++l+++i+el +ke+ +++en +L kk XP_028074828.1 87 RqlqNQVSEVKFWQREAEILRQQLHNLQENYRQLMGEELYGLSVHDLQKLENQLEMSLRGVRMQKDQVLMDEIQELSQKENFMHQENVELYKKA 180 2333677889********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MIQTLESRTV RMGRGKIVIR RIDNTTSRQV TFTKRRNGLL KKAKELAILC DAEVGLIIFS 60 STSKLYEFAS TSMKSVIERY NKSNEERQLQ NQVSEVKFWQ REAEILRQQL HNLQENYRQL 120 MGEELYGLSV HDLQKLENQL EMSLRGVRMQ KDQVLMDEIQ ELSQKENFMH QENVELYKKA 180 NLIRQENMEL CKKIYGTRDV TAANGSTQNP HGFSIGEDSY VPINLQLSQP EQQSHEMPAR 240 ETRSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-101	MIKC_MADS family protein