PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074829.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 27311 Da PI: 8.2097

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84	9e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtf+kRrng+lKKA+EL +LCdaev +iifsst klye++s XP_028074829.1 10 RIDNTTSRQVTFTKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLYEFAS 59 8***********************************************86 PP
2	K-box	78.7	1.5e-26	76	169	8	98
K-box 8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ ++ + +q+e++ L+++++nLq++ R+l+Ge+L Ls+ +Lq+Le+qLe sl+ +R +K+++l+++i+el +ke+ +++en +L kk XP_028074829.1 76 RqlqNQVSEVKFWQREAEILRQQLHNLQENYRQLMGEELYGLSVHDLQKLENQLEMSLRGVRMQKDQVLMDEIQELSQKENFMHQENVELYKKA 169 2333677889********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MGRGKIVIRR IDNTTSRQVT FTKRRNGLLK KAKELAILCD AEVGLIIFSS TSKLYEFAST 60 SMKSVIERYN KSNEERQLQN QVSEVKFWQR EAEILRQQLH NLQENYRQLM GEELYGLSVH 120 DLQKLENQLE MSLRGVRMQK DQVLMDEIQE LSQKENFMHQ ENVELYKKAN LIRQENMELC 180 KKIYGTRDVT AANGSTQNPH GFSIGEDSYV PINLQLSQPE QQSHEMPARE TRSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-101	MIKC_MADS family protein