PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074830.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 180aa MW: 21082.5 Da PI: 10.2296

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.7	5.6e-27	21	70	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtf+kRrng+lKKA+EL +LCdaev +iifsst klye++s XP_028074830.1 21 RIDNTTSRQVTFTKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLYEFAS 70 8***********************************************86 PP
2	K-box	60.4	7.3e-21	87	162	8	79
K-box 8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn.ellleqiee 79 + ++ ++ + +q+e++ L+++++nLq++ R+l+Ge+L Ls+ +Lq+Le+qLe sl+ +R +K ll++q + XP_028074830.1 87 RqlqNQVSEVKFWQREAEILRQQLHNLQENYRQLMGEELYGLSVHDLQKLENQLEMSLRGVRMQKViPLLFMQCLR 162 2333677889*****************************************************9962456666555 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MIQTLESRTV RMGRGKIVIR RIDNTTSRQV TFTKRRNGLL KKAKELAILC DAEVGLIIFS 60 STSKLYEFAS TSMKSVIERY NKSNEERQLQ NQVSEVKFWQ REAEILRQQL HNLQENYRQL 120 MGEELYGLSV HDLQKLENQL EMSLRGVRMQ KVIPLLFMQC LRLKSRTCVA FYAEGPSYLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	3e-76	MIKC_MADS family protein