PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028075013.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 275aa    MW: 31297.1 Da    PI: 5.7953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028075013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l+++++++G  +W++ ++  g+ R++k+c++rw +yl
   XP_028075013.1 14 RGPWTPQEDHILINYINLYGHSNWRALPKQAGLLRCGKSCRLRWANYL 61
                     89******************************99************97 PP
2Myb_DNA-binding55.99.7e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
   XP_028075013.1  67 RGNFSEEEEETIIKLHEKLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MVRAPCCEKM GLKRGPWTPQ EDHILINYIN LYGHSNWRAL PKQAGLLRCG KSCRLRWANY  60
LKPDIKRGNF SEEEEETIIK LHEKLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQKQ  120
PTQLEQEIKP PHSIKIQKND QVTEKEPEEA TMTYPNAVVR LQSPEHSASD ISSITTTSTD  180
NTTTTNTTSM DDDAFDNFPV VDENFWSDVF SVDNSGEMDD FPVAGADPDA QFQLSPRLHA  240
MEHICGGNNS SMHDGMDFWF NLFTKAGGLP ELPEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-78MYB family protein