PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028075140.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 228aa MW: 24764.1 Da PI: 6.9834

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028075140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.2	9.5e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++l+q+ XP_028075140.1 2 SCNGCRVLRKGCSENCILRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISSVPPNQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHLCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_028075140.1 97 AVQTVLR 103 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MSCNGCRVLR KGCSENCILR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISSVPPNQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHLCQAAVQT VLRGGALRPI PEFFGGAVLT 120 PPDLDEASEA EVTCSDMFKL YHHQDPNPDS RSKAAPKRRR IGDELENLGL SLTPSSSEAV 180 VGRVLNFWSS PEKLRPGTPS MNSEESGTTT LHESGGFGDQ TKLLNLFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	161	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	5e-84	LBD family protein