PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028075264.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27246.6 Da    PI: 9.6924
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028075264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.4e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvtfskR+ng+lKKA+ELSvLCdaevaviifs++g+ly++ss
  XP_028075264.1  9 KRIENVTNRQVTFSKRKNGLLKKAYELSVLCDAEVAVIIFSQKGRLYDFSS 59
                    79***********************************************96 PP
2K-box69.61e-23991945100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++ +ee+ +++l++e++ + ++i+ ++  qR++lG+dL s+s++eL+++ +qLe+sl+++R++K+ l++eqi++l++ke+ l een +L++k +
  XP_028075264.1  99 TNNPNEEQFTQQLEHEATIMSQKIKIIEAHQRKFLGQDLASCSVEELREIGSQLEQSLRSVRARKELLFKEQIDRLKEKERLLLEENAKLHEKCA 193
                     344489999***********************************************************************************987 PP

           K-box 100 e 100
                     e
  XP_028075264.1 194 E 194
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVRGKVQLKR IENVTNRQVT FSKRKNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYDFSSS  60
KSRATRKLNC LLYLFTWSIY YPMQKTIERY GEHVKMVQTN NPNEEQFTQQ LEHEATIMSQ  120
KIKIIEAHQR KFLGQDLASC SVEELREIGS QLEQSLRSVR ARKELLFKEQ IDRLKEKERL  180
LLEENAKLHE KCAEKPWQLQ PAKEKEVAMS SRSSLSSEMV ETELFIGLPL MRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-68MIKC_MADS family protein