PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028075265.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 219aa MW: 25542.7 Da PI: 9.8444

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028075265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.1	7.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskR+ng+lKKA+ELSvLCdaevaviifs++g+ly++ss XP_028075265.1 9 KRIENVTNRQVTFSKRKNGLLKKAYELSVLCDAEVAVIIFSQKGRLYDFSS 59 79***********************************************96 PP
2	K-box	59.7	1.2e-20	99	179	5	85
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +++ +ee+ +++l++e++ + ++i+ ++ qR++lG+dL s+s++eL+++ +qLe+sl+++R++K+ l++eqi++l++k XP_028075265.1 99 TNNPNEEQFTQQLEHEATIMSQKIKIIEAHQRKFLGQDLASCSVEELREIGSQLEQSLRSVRARKELLFKEQIDRLKEKCA 179 344489999********************************************************************9965 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MVRGKVQLKR IENVTNRQVT FSKRKNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYDFSSS 60 KSRATRKLNC LLYLFTWSIY YPMQKTIERY GEHVKMVQTN NPNEEQFTQQ LEHEATIMSQ 120 KIKIIEAHQR KFLGQDLASC SVEELREIGS QLEQSLRSVR ARKELLFKEQ IDRLKEKCAE 180 KPWQLQPAKE KEVAMSSRSS LSSEMVETEL FIGLPLMRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	2e-64	MIKC_MADS family protein