PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028075391.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 560aa MW: 60207.4 Da PI: 6.0893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028075391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	375	423	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + sk Ka +L + ++Y++sLq XP_028075391.1 375 NSHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 423 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MDMGGKDNFE QVKGNEDHLM SYHSANAASD WRFGVSNLSI PTSNPMEVYK GGIMESPSCS 60 SAPIMDAFRP TVWDHPTNAQ NLGFCDINLQ NSASTSNTLG LRKGPLGPLS IEKTIDMGWT 120 PPNSIVKGGI CLPSAPGMLP QSLSQFPANS GFIERAARFS CFSGGNFSEM MNPSGISESM 180 NPYTSGAATM QRRQQEMFVG NGLKSVSGGQ SQKNEVNMIA EASKAVSFSV EQGAIEGSPL 240 KNERKSENFV RSQDEAKQDV GVSGKESDDQ AEVSGGGGGG GGQEDPSREP SAKGLGLKKR 300 KRSSQDNELD EVKEASQPPG ETTKDSIEIQ QKGNQTRTSM TIKPSGKHGK HGSQASDSPK 360 EEYIHVRARR GQATNSHSLA ERVRREKISE RMKLLQDIVP GCSKVTGKAV MLDEIINYVQ 420 SLQRQVEFLS MKLATVNPRL DFNVEGLLAK DILQSRAGPS CTLGYSPDMT MPFPSLLPSQ 480 PGLTQTGLPG MSNSLDALQR SLNSQLAAMS GGYKEPTQVP NIWGEDELHN VVQMGFNSSA 540 PLDSQDLNGS LPSGHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MDMGGKDNFE QVKGNEDHLM SYHSANAASD WRFGVSNLSI PTSNPMEVYK GGIMESPSCS  60
SAPIMDAFRP TVWDHPTNAQ NLGFCDINLQ NSASTSNTLG LRKGPLGPLS IEKTIDMGWT  120
PPNSIVKGGI CLPSAPGMLP QSLSQFPANS GFIERAARFS CFSGGNFSEM MNPSGISESM  180
NPYTSGAATM QRRQQEMFVG NGLKSVSGGQ SQKNEVNMIA EASKAVSFSV EQGAIEGSPL  240
KNERKSENFV RSQDEAKQDV GVSGKESDDQ AEVSGGGGGG GGQEDPSREP SAKGLGLKKR  300
KRSSQDNELD EVKEASQPPG ETTKDSIEIQ QKGNQTRTSM TIKPSGKHGK HGSQASDSPK  360
EEYIHVRARR GQATNSHSLA ERVRREKISE RMKLLQDIVP GCSKVTGKAV MLDEIINYVQ  420
SLQRQVEFLS MKLATVNPRL DFNVEGLLAK DILQSRAGPS CTLGYSPDMT MPFPSLLPSQ  480
PGLTQTGLPG MSNSLDALQR SLNSQLAAMS GGYKEPTQVP NIWGEDELHN VVQMGFNSSA  540
PLDSQDLNGS LPSGHMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	303	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-119	bHLH family protein