PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028075829.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 635aa MW: 67913.3 Da PI: 6.1561

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028075829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.8e-08	199	243	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I + Rt+ q+ rw XP_028075829.1 199 RKPWSAAEDLELIAAVQKCGEGNWANILKGDFkHDRTASQLSQRW 243 789************************974223566766666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MIEKTKKHKK GSISENDIST LLQRYEATTV LTLLQEVAQI QDVKIDWNAL VKKTATGISN 60 VREYQMLWRH LAYRDTLVER LDDGAEPLDD DSDLDYELEV LPPVSSEAST EAAACVKVLI 120 ASGLQSDTSL SNGLTVEAPL TINIPNAQSS RGPLENSQLQ GTNVTIPVSV QKQPLPMVMS 180 EVLDANGSAS GNLPPRRKRK PWSAAEDLEL IAAVQKCGEG NWANILKGDF KHDRTASQLS 240 QRWTIIRKRR SNVNVGGGSQ LSEAQLAARR AVSLALNMPM VDSLTAACSN AATNLNTAPS 300 NPTRPVAVEA SSVGTQSQHL SRQDSIPTTS KSRVTIKRPL TKPTLSPDDM VKAAAVAAGA 360 RIATPSDAAS LLKAAQAKNA VHIIPGNGSL IKSPSAASTN SLPPNVHFIR TGLTATPTST 420 YPTFSTNASR PGGAQQSQNN SSKPATELNP SAVVTNAIIT SSLVASELKA FDALNSLSCN 480 PPKEHVKEGQ DGVLCNAARE QVQEARAIVS GDALEEKVND KYLKKEKVNE VHQASVSGNA 540 PKEQVQDQTA LPSSETILKG QNDLVENLKC SSNSKITRDC QTGIISEDPT SGSDKGDDDM 600 MIAMPIEEGR EIQAAVEKTC EKQRLDAQQS VMKED

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MIEKTKKHKK GSISENDIST LLQRYEATTV LTLLQEVAQI QDVKIDWNAL VKKTATGISN  60
VREYQMLWRH LAYRDTLVER LDDGAEPLDD DSDLDYELEV LPPVSSEAST EAAACVKVLI  120
ASGLQSDTSL SNGLTVEAPL TINIPNAQSS RGPLENSQLQ GTNVTIPVSV QKQPLPMVMS  180
EVLDANGSAS GNLPPRRKRK PWSAAEDLEL IAAVQKCGEG NWANILKGDF KHDRTASQLS  240
QRWTIIRKRR SNVNVGGGSQ LSEAQLAARR AVSLALNMPM VDSLTAACSN AATNLNTAPS  300
NPTRPVAVEA SSVGTQSQHL SRQDSIPTTS KSRVTIKRPL TKPTLSPDDM VKAAAVAAGA  360
RIATPSDAAS LLKAAQAKNA VHIIPGNGSL IKSPSAASTN SLPPNVHFIR TGLTATPTST  420
YPTFSTNASR PGGAQQSQNN SSKPATELNP SAVVTNAIIT SSLVASELKA FDALNSLSCN  480
PPKEHVKEGQ DGVLCNAARE QVQEARAIVS GDALEEKVND KYLKKEKVNE VHQASVSGNA  540
PKEQVQDQTA LPSSETILKG QNDLVENLKC SSNSKITRDC QTGIISEDPT SGSDKGDDDM  600
MIAMPIEEGR EIQAAVEKTC EKQRLDAQQS VMKED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	201	PRRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-72	MYB_related family protein