PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028075979.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 260aa MW: 31392.8 Da PI: 8.4398

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028075979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.7	3.2e-23	23	106	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ qe+++ + +r e++ ++ ++k++k lW+ ++ km e+g++rs +qCk+kw+nl +ryk +++++ + t++ +++p++++l+ XP_028075979.1 23 WSVQETRDFLMIRAELDPTFMETKRNKLLWDVIATKMNEKGYNRSTEQCKNKWKNLVTRYKGCQTMKLE-TQGMCQHFPFYNELQ 106 ***************************************************************9998.6888899****98 PP
2	Myb_DNA-binding	22.1	3.6e-07	23	78	4	47
S-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 W+ +E ++ ++l + W+ Ia +m+ +R+ +qck++w ++ XP_028075979.1 23 WSVQETRDFLMIRAELDPTfmetkrnklLWDVIATKMNekgYNRSTEQCKNKWKNL 78 77777777777777777667777777888*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MEGYDGHYMS VNIDNTGDRF PHWSVQETRD FLMIRAELDP TFMETKRNKL LWDVIATKMN 60 EKGYNRSTEQ CKNKWKNLVT RYKGCQTMKL ETQGMCQHFP FYNELQAIFT ARMERMLWTQ 120 AEGRSNNNED DNEESDTVRE MISNSKKKKK RKVIKTGINQ GSASSSEKLK ILKELLEEFM 180 KQNMEMEMLW IKAYEAREDE RMVKEMEWRQ TMDALENERI MLDRRWRERQ EQRGMRDEVR 240 AERRDALVTV LLNKLRREDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	152	KKKKKRK
2	147	152	KKKKRK
3	148	153	KKKRKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-45	Trihelix family protein