PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076120.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 301aa MW: 34247.4 Da PI: 5.6274

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl XP_028076120.1 14 RGLWSPEEDEKLIRYITSHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE+ l++ ++ G++ W+ Ia++++ gRt++++k++w+++ XP_028076120.1 67 RGRFTPEEERLIISLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGQHSCCNQQ KVKRGLWSPE EDEKLIRYIT SHGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEERLIIS LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPP 120 ATNKPCSDQH SQLGYTVNRA DNFFNQDLVM TKPPFQDAMF SSSPNPNLFM FDTGNERAEL 180 FHEPVGLSSE TWVMNQEQGQ ACPPMASFTT TMDSNYLSSL VENIEGMVTM EVQSCSVNNE 240 GREMGLECLQ RQEELNEWVI ESQQCPSFLF WDHAEGSLGG DEIAPTSSNL GTILSSYPSS 300 L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	9e-92	MYB family protein