PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076250.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 695aa MW: 76082.1 Da PI: 9.2183

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	597	646	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_028076250.1 597 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MVLQNRLDYG FNGYQVPPIP RGTRSARRRR AISKKVDDRQ MCAFDLLATV AGKLLLEGES 60 SPSSSNSLTG TIVKGSIKKE QQDEDIPSKV EPCGQGSCDR SSFVSELVSQ TLVLHHSSKE 120 FSHVHNDDCS GVASVITSDC SEKVGSAEKL VSGKGKIQLG SFASKVEVAS SGYQEPCDCT 180 LEDENKNKKQ IKIEPPKTGK ASNNTKADMC SSDDPAVMNR KPPTPVSLDN SVKLPLCTDY 240 IPSGSFPACR DDVKLVIRDD DENSSGCTQP STATKAFRPP PRIGKRRIRK LLASKYWKVT 300 PKLKDEDHFN ADSETRSVYH NRKIGYKRKR SLTDYPIKKR IFYDHSSVSN SDGGISSEGI 360 SSSPRKGLSC DASGSGATIH GASGTSACVA VQHPPFQSRD SHVKVRITSF KVPELFIEMP 420 ETATVGSLKR SVMDAVTAIL GGGLRVGVLL QGKKIRDENK TLLQTGISRD NKLDALGFSL 480 EPNPSQAAPP LCHEDHTFLL ACDTPQPLTR YPPAPSVVHN VVEQSTADAS PDPPLTNVGN 540 FVDSDHDSAP SPPDMSIDKS PTDSRALVAV PAMNVEALSV VPMRKSKRSE AVQRRIRRPF 600 SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE 660 PVPQELLDRV LAAHAYWSQQ QAKQQLKQQL ETCLL

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MVLQNRLDYG FNGYQVPPIP RGTRSARRRR AISKKVDDRQ MCAFDLLATV AGKLLLEGES  60
SPSSSNSLTG TIVKGSIKKE QQDEDIPSKV EPCGQGSCDR SSFVSELVSQ TLVLHHSSKE  120
FSHVHNDDCS GVASVITSDC SEKVGSAEKL VSGKGKIQLG SFASKVEVAS SGYQEPCDCT  180
LEDENKNKKQ IKIEPPKTGK ASNNTKADMC SSDDPAVMNR KPPTPVSLDN SVKLPLCTDY  240
IPSGSFPACR DDVKLVIRDD DENSSGCTQP STATKAFRPP PRIGKRRIRK LLASKYWKVT  300
PKLKDEDHFN ADSETRSVYH NRKIGYKRKR SLTDYPIKKR IFYDHSSVSN SDGGISSEGI  360
SSSPRKGLSC DASGSGATIH GASGTSACVA VQHPPFQSRD SHVKVRITSF KVPELFIEMP  420
ETATVGSLKR SVMDAVTAIL GGGLRVGVLL QGKKIRDENK TLLQTGISRD NKLDALGFSL  480
EPNPSQAAPP LCHEDHTFLL ACDTPQPLTR YPPAPSVVHN VVEQSTADAS PDPPLTNVGN  540
FVDSDHDSAP SPPDMSIDKS PTDSRALVAV PAMNVEALSV VPMRKSKRSE AVQRRIRRPF  600
SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LAAHAYWSQQ QAKQQLKQQL ETCLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-121	MYB_related family protein