PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076251.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 689aa MW: 75545.5 Da PI: 9.2182

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	591	640	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_028076251.1 591 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 640 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MVLQNRLDYG FNGYQVPPIP RGTRSARRRR AISKKVDDRQ MCAFDLLATV AGKLLLEGES 60 SPSSSNSLTG TIVKGSIKKE QQDEDIPSKV EPCGQGSCDR SSFVSELVSQ TLVLHHSSKE 120 FSHVHNDDCS GVASVITSDC SEKVGSAEKL VSGKGKIQLG SFASKVEVAS SGYQEPCDCT 180 LEDENKNKKQ IKIEPPKTGK ASNNTKADMC SSDDPAVMNR KPPTPVSLDN SVKLPLCTDY 240 IPSGSFPACR DDVKLVIRDD DENSSGCTQP STATKAFRPP PRIGKRRIRK LLASKYWKVT 300 PKLKDEDHFN ADSETRSVYH NRKIGYKRKR SLTDYPIKKR IFYDHSSVSN SDGGISSEGI 360 SSSPRKGLSC DASGSASGTS ACVAVQHPPF QSRDSHVKVR ITSFKVPELF IEMPETATVG 420 SLKRSVMDAV TAILGGGLRV GVLLQGKKIR DENKTLLQTG ISRDNKLDAL GFSLEPNPSQ 480 AAPPLCHEDH TFLLACDTPQ PLTRYPPAPS VVHNVVEQST ADASPDPPLT NVGNFVDSDH 540 DSAPSPPDMS IDKSPTDSRA LVAVPAMNVE ALSVVPMRKS KRSEAVQRRI RRPFSVSEVE 600 ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL 660 LDRVLAAHAY WSQQQAKQQL KQQLETCLL

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MVLQNRLDYG FNGYQVPPIP RGTRSARRRR AISKKVDDRQ MCAFDLLATV AGKLLLEGES  60
SPSSSNSLTG TIVKGSIKKE QQDEDIPSKV EPCGQGSCDR SSFVSELVSQ TLVLHHSSKE  120
FSHVHNDDCS GVASVITSDC SEKVGSAEKL VSGKGKIQLG SFASKVEVAS SGYQEPCDCT  180
LEDENKNKKQ IKIEPPKTGK ASNNTKADMC SSDDPAVMNR KPPTPVSLDN SVKLPLCTDY  240
IPSGSFPACR DDVKLVIRDD DENSSGCTQP STATKAFRPP PRIGKRRIRK LLASKYWKVT  300
PKLKDEDHFN ADSETRSVYH NRKIGYKRKR SLTDYPIKKR IFYDHSSVSN SDGGISSEGI  360
SSSPRKGLSC DASGSASGTS ACVAVQHPPF QSRDSHVKVR ITSFKVPELF IEMPETATVG  420
SLKRSVMDAV TAILGGGLRV GVLLQGKKIR DENKTLLQTG ISRDNKLDAL GFSLEPNPSQ  480
AAPPLCHEDH TFLLACDTPQ PLTRYPPAPS VVHNVVEQST ADASPDPPLT NVGNFVDSDH  540
DSAPSPPDMS IDKSPTDSRA LVAVPAMNVE ALSVVPMRKS KRSEAVQRRI RRPFSVSEVE  600
ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL  660
LDRVLAAHAY WSQQQAKQQL KQQLETCLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-122	MYB_related family protein