PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076253.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 655aa MW: 71383.7 Da PI: 8.6071

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.2e-07	557	606	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_028076253.1 557 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 606 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MCAFDLLATV AGKLLLEGES SPSSSNSLTG TIVKGSIKKE QQDEDIPSKV EPCGQGSCDR 60 SSFVSELVSQ TLVLHHSSKE FSHVHNDDCS GVASVITSDC SEKVGSAEKL VSGKGKIQLG 120 SFASKVEVAS SGYQEPCDCT LEDENKNKKQ IKIEPPKTGK ASNNTKADMC SSDDPAVMNR 180 KPPTPVSLDN SVKLPLCTDY IPSGSFPACR DDVKLVIRDD DENSSGCTQP STATKAFRPP 240 PRIGKRRIRK LLASKYWKVT PKLKDEDHFN ADSETRSVYH NRKIGYKRKR SLTDYPIKKR 300 IFYDHSSVSN SDGGISSEGI SSSPRKGLSC DASGSGATIH GASGTSACVA VQHPPFQSRD 360 SHVKVRITSF KVPELFIEMP ETATVGSLKR SVMDAVTAIL GGGLRVGVLL QGKKIRDENK 420 TLLQTGISRD NKLDALGFSL EPNPSQAAPP LCHEDHTFLL ACDTPQPLTR YPPAPSVVHN 480 VVEQSTADAS PDPPLTNVGN FVDSDHDSAP SPPDMSIDKS PTDSRALVAV PAMNVEALSV 540 VPMRKSKRSE AVQRRIRRPF SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK 600 DKWKTLVHTA RISPQQRRGE PVPQELLDRV LAAHAYWSQQ QAKQQLKQQL ETCLL

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MCAFDLLATV AGKLLLEGES SPSSSNSLTG TIVKGSIKKE QQDEDIPSKV EPCGQGSCDR  60
SSFVSELVSQ TLVLHHSSKE FSHVHNDDCS GVASVITSDC SEKVGSAEKL VSGKGKIQLG  120
SFASKVEVAS SGYQEPCDCT LEDENKNKKQ IKIEPPKTGK ASNNTKADMC SSDDPAVMNR  180
KPPTPVSLDN SVKLPLCTDY IPSGSFPACR DDVKLVIRDD DENSSGCTQP STATKAFRPP  240
PRIGKRRIRK LLASKYWKVT PKLKDEDHFN ADSETRSVYH NRKIGYKRKR SLTDYPIKKR  300
IFYDHSSVSN SDGGISSEGI SSSPRKGLSC DASGSGATIH GASGTSACVA VQHPPFQSRD  360
SHVKVRITSF KVPELFIEMP ETATVGSLKR SVMDAVTAIL GGGLRVGVLL QGKKIRDENK  420
TLLQTGISRD NKLDALGFSL EPNPSQAAPP LCHEDHTFLL ACDTPQPLTR YPPAPSVVHN  480
VVEQSTADAS PDPPLTNVGN FVDSDHDSAP SPPDMSIDKS PTDSRALVAV PAMNVEALSV  540
VPMRKSKRSE AVQRRIRRPF SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK  600
DKWKTLVHTA RISPQQRRGE PVPQELLDRV LAAHAYWSQQ QAKQQLKQQL ETCLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-121	MYB_related family protein