PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028076383.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 279aa    MW: 31898.1 Da    PI: 4.4526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028076383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-19653148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv++++ +G g W+++a++ g++Rt+k+c++rw++yl
   XP_028076383.1  6 KGPWTEEEDSTLVNYITIYGEGPWNSVAQCAGLNRTGKSCRLRWLNYL 53
                     79********************************************97 PP
2Myb_DNA-binding431e-1359102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+ l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_028076383.1  59 RGNLTLQEQFLILHLHLRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 102
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MEFIRKGPWT EEEDSTLVNY ITIYGEGPWN SVAQCAGLNR TGKSCRLRWL NYLRPDVRRG  60
NLTLQEQFLI LHLHLRWGNR WSKIAQQLPG RTDNEIKNYW RTRIQKQAKQ LNCDVNSNEF  120
RDTIRNFLLP RLVDQIQAES DALSSMAEPT SIHDSSATET WMIASSSQQQ FLEKQSVFTD  180
CDSDHALANI WLNISSLTDW GGCFGATGLT SDRNNACCEQ DMFDDAEEEE EETMEYRKAS  240
QLAGGGGGGW GSVDTMLYYD GGEEGYTNNT SFDYHYTFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.13e-75MYB family protein