PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028077141.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 328aa    MW: 36840.5 Da    PI: 6.8515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028077141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l d ++++G g+W++ +++ g++R++k+c++rw +yl
   XP_028077141.1 15 KGPWTPEEDEKLSDFIQKHGHGSWRALPKRAGLNRCGKSCRLRWINYL 62
                     79********************************************97 PP
2Myb_DNA-binding57.53.2e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+ +++d++  lG++ W++Ia++++ gRt++++k++w++++
   XP_028077141.1  68 RGKFSEEEERIIIDLHSVLGNK-WSRIAAHLP-GRTDNEIKNYWNTHM 113
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDMSASHDES VVVKKGPWTP EEDEKLSDFI QKHGHGSWRA LPKRAGLNRC GKSCRLRWIN  60
YLRPDIKRGK FSEEEERIII DLHSVLGNKW SRIAAHLPGR TDNEIKNYWN THMRKKLLQR  120
GIDPKTHKPI PDLNLLGNLS QLLSASPNFG INSMNPWDNI AFRSEVDATH QLAKLQLLQT  180
LMQVINPTPF PNISGNCLLT PNTAQFERGL AGANPQETFD FPNLGLNLNP QIFNNFTDVP  240
SSMTSFEGGY QPEVVNANCN SMVSEYHTQT NQNTLPALVE SSCNVNQVES KINLSYPSSS  300
HSSASNIFEA LEKFLGDEAS GPWKDMLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-78MYB family protein