PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077801.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 466aa MW: 50833.8 Da PI: 8.1092

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	49	74	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++CkF+H+ XP_028077801.1 49 PGEPDCIYYLRTGLCGYGSNCKFNHP 74 5789*********************9 PP
2	zf-CCCH	33.8	5.7e-11	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ +tGtCkyG++Ck++H++ XP_028077801.1 96 QPDCGYYIKTGTCKYGSTCKYHHPR 120 789********************96 PP
3	zf-CCCH	38.5	1.9e-12	141	165	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G CkF+H++ XP_028077801.1 141 EKPCPFYMKTGLCKFGIACKFNHPQ 165 689********************97 PP
4	zf-CCCH	28.2	3.3e-09	290	315	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tG CkyG Ck++H++ XP_028077801.1 290 DQPECRHYMSTGSCKYGFDCKYNHPR 315 689*********************96 PP
5	zf-CCCH	33	9.9e-11	336	361	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ +G CkyG++CkF H++ XP_028077801.1 336 GQAVCSYYNLYGLCKYGPTCKFDHPM 361 7899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MPDNRQVQSN GGVSNSSPNN LEEAIRRFNI HPNGIQDSGA TANSYPDRPG EPDCIYYLRT 60 GLCGYGSNCK FNHPTSSSGQ VQGGQYKGEL PERVGQPDCG YYIKTGTCKY GSTCKYHHPR 120 DRHGAAPVQM NILGLPLRQQ EKPCPFYMKT GLCKFGIACK FNHPQPASAG TVFPIPGSAA 180 YGSSGSTVVS SSGLHYVGGV SASSLPKTPY LSGPRAQGPQ TYMPVVVSPS QGIAPAHVWN 240 TYMGCMSHVS STSYLGSDFV YNSKNQGESG SIGMVHMLPT SIPHLPERPD QPECRHYMST 300 GSCKYGFDCK YNHPRERIAQ LATNSLGPLG LPLRPGQAVC SYYNLYGLCK YGPTCKFDHP 360 MTGYPYNYGL SYLLCSIRPQ VWKELRDSRR NEATVLDFLG ELEAHQIAQQ TETSPSKPSK 420 VPDWVRKSES ASNKNHNLDT ENSSEHAGSP PHPTPISSEL PHDHSD

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MPDNRQVQSN GGVSNSSPNN LEEAIRRFNI HPNGIQDSGA TANSYPDRPG EPDCIYYLRT  60
GLCGYGSNCK FNHPTSSSGQ VQGGQYKGEL PERVGQPDCG YYIKTGTCKY GSTCKYHHPR  120
DRHGAAPVQM NILGLPLRQQ EKPCPFYMKT GLCKFGIACK FNHPQPASAG TVFPIPGSAA  180
YGSSGSTVVS SSGLHYVGGV SASSLPKTPY LSGPRAQGPQ TYMPVVVSPS QGIAPAHVWN  240
TYMGCMSHVS STSYLGSDFV YNSKNQGESG SIGMVHMLPT SIPHLPERPD QPECRHYMST  300
GSCKYGFDCK YNHPRERIAQ LATNSLGPLG LPLRPGQAVC SYYNLYGLCK YGPTCKFDHP  360
MTGYPYNYGL SYLLCSIRPQ VWKELRDSRR NEATVLDFLG ELEAHQIAQQ TETSPSKPSK  420
VPDWVRKSES ASNKNHNLDT ENSSEHAGSP PHPTPISSEL PHDHSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-105	C3H family protein