PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028078337.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 24468.9 Da    PI: 9.3481
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028078337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.3e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngilKKA+E+ vLCda+v++++f+s+gk++e++s
  XP_028078337.1  9 KRIENTSNRQVTYSKRRNGILKKAKEITVLCDAKVSLVVFGSSGKMHEFCS 59
                    79***********************************************96 PP
2K-box76.76.2e-26711701100
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+++sgk+l++ak+e+l++el+++kke+++Lq e+Rhl+Ged++sL+ ++L+ +e+ Le++l+++R k++e+ +++ ++ ++ e+++++ n  L+
  XP_028078337.1  71 YHQQSGKRLWDAKHENLSNELDRIKKENDSLQIELRHLKGEDITSLQPRDLMAIENTLETGLESVRYKQSEIHRMMKKNGKMLEEDNKQLNLILH 165
                     7899******************************************************************************************* PP

           K-box  96 kklee 100
                     ++ +e
  XP_028078337.1 166 QQEME 170
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MGRGKIEIKR IENTSNRQVT YSKRRNGILK KAKEITVLCD AKVSLVVFGS SGKMHEFCSP  60
STTLVDILEK YHQQSGKRLW DAKHENLSNE LDRIKKENDS LQIELRHLKG EDITSLQPRD  120
LMAIENTLET GLESVRYKQS EIHRMMKKNG KMLEEDNKQL NLILHQQEME RESRELENGY  180
HRQVNDYQPQ MPFTFRVQPI QPNLHERI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-85MIKC_MADS family protein