PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028078519.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26570.7 Da    PI: 5.0961
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028078519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.63.8e-191261150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk    vt+ kR+n ++KK  ELS+LCd++v  + f+++g++ +++
  XP_028078519.1 12 KRIENKKALRVTYMKRKNCVIKKTMELSILCDINVFTLCFGPNGEVDTWP 61
                    79***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEDDEKGKKP MKRIENKKAL RVTYMKRKNC VIKKTMELSI LCDINVFTLC FGPNGEVDTW  60
PQNPNEVKAL IKMYKQSAKK SPVRKTCESS FSDCCLGAEK VAKKVLVGNE DGYGWLDGLS  120
AESAMSFLGK LESKLEVLKA RIEFLKMVKE QKNRGVVVMG KETEQTSCWF DDTNAIDNLQ  180
KNRGVIVMGK ETEEACWFDD TSAIDNFEDD DLAMLLEPCY QLEPCYQYQF GIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.11e-15MIKC_MADS family protein