PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078541.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 204aa MW: 23422.8 Da PI: 10.2771

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l +a++ +G+++W++Ia + g+ +k+c++rw++yl XP_028078541.1 20 RGSWTAEEDQKLSQAIETYGSKRWESIAVKAGLSHGGKSCRLRWLNYL 67 89****************************999*********97 PP
2	Myb_DNA-binding	46.3	1e-14	73	116	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_028078541.1 73 KGNISDQEKDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 116 678899**************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MSTMAAPKNN SQCTKKRPNR GSWTAEEDQK LSQAIETYGS KRWESIAVKA GLSHGGKSCR 60 LRWLNYLRPN IKKGNISDQE KDLILRLHKL LGNRWSLIAG RLPGRTDNEI KNYWNSRLSK 120 KLRFQSKRKI SKTTQAYKKL QKTKEIKTEK AAGIVKDEGT SKIDENSKIN LIENGDALFD 180 CFEEGPPSLE WMREFLEVDE GCYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-48	MYB family protein