PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028078573.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 704aa    MW: 77619 Da    PI: 7.125
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028078573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24135236199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +    +
  XP_028078573.1 135 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GGD 226
                     99****************************963.3445679************************************************3..379 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_028078573.1 227 GELRLGIRRA 236
                     999****997 PP
2Auxin_resp119.13.6e-39261342182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+s++svF+++YnPra +seF++++ k++k+l+++++vGmRfkm+feted +err++G+++g+sd+dpvrWp+SkWr+L
  XP_028078573.1 261 VVNAISMRSVFSICYNPRANSSEFIIPFCKFSKSLTNSCTVGMRFKMRFETEDTAERRYTGLITGISDVDPVRWPGSKWRCL 342
                     6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MCGLIDLNTV DDDDTAAPSS SAAATAVCLE LWHACAGPLV SLPKKGSVVV YFPQAHLEHS  60
SDFPSSAYDL PPHVFCRVLD VKLHAEADTD EVYAQVSLIP DAQQIEQKWK QGEIEAESEE  120
EDIEGAAKSS TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPSLDYKQQR PSQELVAKDL  180
HGIEWKFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGGDGELR LGIRRASQVK  240
SDSTFPVLSS QKLNFGSISV VVNAISMRSV FSICYNPRAN SSEFIIPFCK FSKSLTNSCT  300
VGMRFKMRFE TEDTAERRYT GLITGISDVD PVRWPGSKWR CLLVRWDDLE NIRHNRVSPW  360
EIEPTGSVSA SSSLVAPGMK RTRVGLPFTK PDFPVPRDGA GLSDFGESSR FQKVLQGQEI  420
LSFNSPYDGS DIPNHHPSEP RRFAPGSGNS TSSAIGSVRN LLGDTSISYK STGFGESFRF  480
NEVLQGQETF SNSPYGRGPR ITEGVQASRS GSGWSALMQG YSTYLCPSAP SMQVSSPSSV  540
LMFQQARAPA PNFHGTRSVN QEEHEFSNRS SFDVSETYGR KLTSSSPCEH TSRKEATQGF  600
NSFGLLKEQN QLGISHSTFA IHSSYRGSQD LVSTCKSSCK LFGFPLTEER NVKNKDCNPT  660
QSFLPRDEEH LNPKPTLVTK IVGNSCTNVT ELYAVRDMLL DIAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein