PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078582.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 703aa MW: 77490.8 Da PI: 7.125

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.8	1.2e-24	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + XP_028078582.1 134 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GGD 225 99**************************963.3445679********************************************3..379 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_028078582.1 226 GELRLGIRRA 235 999**997 PP
2	Auxin_resp	119.1	3.6e-39	260	341	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++svF+++YnPra +seF++++ k++k+l+++++vGmRfkm+feted +err++G+++g+sd+dpvrWp+SkWr+L XP_028078582.1 260 VVNAISMRSVFSICYNPRANSSEFIIPFCKFSKSLTNSCTVGMRFKMRFETEDTAERRYTGLITGISDVDPVRWPGSKWRCL 341 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MCGLIDLNTV DDDDTAAPSS SAAATAVCLE LWHACAGPLV SLPKKGSVVV YFPQAHLEHS 60 SDFPSSAYDL PPHVFCRVLD VKLHAEADTD EVYAQVSLIP DAQIEQKWKQ GEIEAESEEE 120 DIEGAAKSST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PSLDYKQQRP SQELVAKDLH 180 GIEWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGGDGELRL GIRRASQVKS 240 DSTFPVLSSQ KLNFGSISVV VNAISMRSVF SICYNPRANS SEFIIPFCKF SKSLTNSCTV 300 GMRFKMRFET EDTAERRYTG LITGISDVDP VRWPGSKWRC LLVRWDDLEN IRHNRVSPWE 360 IEPTGSVSAS SSLVAPGMKR TRVGLPFTKP DFPVPRDGAG LSDFGESSRF QKVLQGQEIL 420 SFNSPYDGSD IPNHHPSEPR RFAPGSGNST SSAIGSVRNL LGDTSISYKS TGFGESFRFN 480 EVLQGQETFS NSPYGRGPRI TEGVQASRSG SGWSALMQGY STYLCPSAPS MQVSSPSSVL 540 MFQQARAPAP NFHGTRSVNQ EEHEFSNRSS FDVSETYGRK LTSSSPCEHT SRKEATQGFN 600 SFGLLKEQNQ LGISHSTFAI HSSYRGSQDL VSTCKSSCKL FGFPLTEERN VKNKDCNPTQ 660 SFLPRDEEHL NPKPTLVTKI VGNSCTNVTE LYAVRDMLLD IAL

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MCGLIDLNTV DDDDTAAPSS SAAATAVCLE LWHACAGPLV SLPKKGSVVV YFPQAHLEHS  60
SDFPSSAYDL PPHVFCRVLD VKLHAEADTD EVYAQVSLIP DAQIEQKWKQ GEIEAESEEE  120
DIEGAAKSST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PSLDYKQQRP SQELVAKDLH  180
GIEWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGGDGELRL GIRRASQVKS  240
DSTFPVLSSQ KLNFGSISVV VNAISMRSVF SICYNPRANS SEFIIPFCKF SKSLTNSCTV  300
GMRFKMRFET EDTAERRYTG LITGISDVDP VRWPGSKWRC LLVRWDDLEN IRHNRVSPWE  360
IEPTGSVSAS SSLVAPGMKR TRVGLPFTKP DFPVPRDGAG LSDFGESSRF QKVLQGQEIL  420
SFNSPYDGSD IPNHHPSEPR RFAPGSGNST SSAIGSVRNL LGDTSISYKS TGFGESFRFN  480
EVLQGQETFS NSPYGRGPRI TEGVQASRSG SGWSALMQGY STYLCPSAPS MQVSSPSSVL  540
MFQQARAPAP NFHGTRSVNQ EEHEFSNRSS FDVSETYGRK LTSSSPCEHT SRKEATQGFN  600
SFGLLKEQNQ LGISHSTFAI HSSYRGSQDL VSTCKSSCKL FGFPLTEERN VKNKDCNPTQ  660
SFLPRDEEHL NPKPTLVTKI VGNSCTNVTE LYAVRDMLLD IAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein