PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078919.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 421aa MW: 48019.3 Da PI: 8.4624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078919.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	241	288	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h +Er+RR+r+ + + L l+P + +++Ka+iLe +v+YIk+Lq XP_028078919.1 241 RNHILAERKRRERLSQMIISLCALIPGL-----ARMDKASILEGTVKYIKQLQ 288 6899*********************7.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MLEVKPNGQS TKTFAGGYTK RNNIQEIKTH LLEIEIKRNN ILEIKTHFIF KRNNIFKRNQ 60 NFAGDRNRVR NPFTGGYTTK TFQSRTETSE LDREMEKMNS AVDESLDEFF FKCLFPEVYS 120 SYTSINNESI PIETSEQIVA ENVRTDTNHN MALVDSSTFN DNDISLKQLG SPSTQPEQLN 180 GANTYCIGKP NDDELMSQEN MNLSSPLNSG QSSEENQNNA SETRKRNKRV GGRTRGSLHA 240 RNHILAERKR RERLSQMIIS LCALIPGLAR MDKASILEGT VKYIKQLQER ERTLEKVCKR 300 KLVEPTAFPV KRFQSSNDDD DVSSEDNFDE KLKQLSPEIE ARLSENNVLI RIHCEKRHRT 360 DIPAKILSEM QTLHLNVTNS IAVPFGNAAI DMTIIAQMDN GFNMTAKDLV KNLRLALVKL 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MLEVKPNGQS TKTFAGGYTK RNNIQEIKTH LLEIEIKRNN ILEIKTHFIF KRNNIFKRNQ  60
NFAGDRNRVR NPFTGGYTTK TFQSRTETSE LDREMEKMNS AVDESLDEFF FKCLFPEVYS  120
SYTSINNESI PIETSEQIVA ENVRTDTNHN MALVDSSTFN DNDISLKQLG SPSTQPEQLN  180
GANTYCIGKP NDDELMSQEN MNLSSPLNSG QSSEENQNNA SETRKRNKRV GGRTRGSLHA  240
RNHILAERKR RERLSQMIIS LCALIPGLAR MDKASILEGT VKYIKQLQER ERTLEKVCKR  300
KLVEPTAFPV KRFQSSNDDD DVSSEDNFDE KLKQLSPEIE ARLSENNVLI RIHCEKRHRT  360
DIPAKILSEM QTLHLNVTNS IAVPFGNAAI DMTIIAQMDN GFNMTAKDLV KNLRLALVKL  420
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	252	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-39	bHLH family protein