PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078992.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 380aa MW: 42857.3 Da PI: 9.0855

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H XP_028078992.1 43 YICEICNQGFQREQNLQMHRRRH 65 89********************9 PP
2	zf-C2H2	15.7	4.2e-05	124	145	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C+k + +s++k H++t+ XP_028078992.1 124 ICEKCSKGYAVQSDFKAHLKTC 145 7*******************98 PP
3	zf-C2H2	11.2	0.0012	153	171	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_028078992.1 153 DCGRVFSRVESFIEHQDTC 171 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MLSNSFFENG TSIKRKRRPA GTPDPDAEVV SLSPKTLVES DRYICEICNQ GFQREQNLQM 60 HRRRHKVPWK LVKREETASA VRRKRVFVCP EPSCLHHHPS HALGDLVGIK KHFRRKHSNQ 120 RQWICEKCSK GYAVQSDFKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CNMGRQSLQS 180 ESQSPAQPPA SSPSSSIDNN LELQLLTTTT ATITTTTTSS FPKAKLDESS HSSTKLQLSI 240 GSSSESDIAI VMADKAYAEE ARRQAKQQIE AAEREFANAK RIRQQAVAEV DKACWALKEQ 300 IINSTTIDLH QMITCHACMQ QQQVRAPPPA DHEIEKSLSL VLTSYTNMSS SSSAITRRQV 360 VHENPTYHPQ FAHHPYPRPF

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MLSNSFFENG TSIKRKRRPA GTPDPDAEVV SLSPKTLVES DRYICEICNQ GFQREQNLQM  60
HRRRHKVPWK LVKREETASA VRRKRVFVCP EPSCLHHHPS HALGDLVGIK KHFRRKHSNQ  120
RQWICEKCSK GYAVQSDFKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CNMGRQSLQS  180
ESQSPAQPPA SSPSSSIDNN LELQLLTTTT ATITTTTTSS FPKAKLDESS HSSTKLQLSI  240
GSSSESDIAI VMADKAYAEE ARRQAKQQIE AAEREFANAK RIRQQAVAEV DKACWALKEQ  300
IINSTTIDLH QMITCHACMQ QQQVRAPPPA DHEIEKSLSL VLTSYTNMSS SSSAITRRQV  360
VHENPTYHPQ FAHHPYPRPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	19	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-116	C2H2 family protein