PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079461.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 209aa MW: 23953.1 Da PI: 6.3062

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	55	108	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq + Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_028079461.1 55 KRKLSDEQANLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 108 45899***********************************************95 PP
2	HD-ZIP_I/II	117.1	1e-37	54	145	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eq++lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e+++Le+ev +L+e+l+e XP_028079461.1 54 RKRKLSDEQANLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTELDSAVVEKCHLETEVMKLKEQLSE 145 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MTTSINPQVE DQMVLISQFY PGIYTQLVPQ QGEAKPRRRR KKSKGEGSGG GAARKRKLSD 60 EQANLLELNF GNEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYSKLKT 120 ELDSAVVEKC HLETEVMKLK EQLSEAEKEI QRLLERCDGV SSNSPASSFS MEAMDPPPFL 180 GEFGMEGFGN IFYVPENNYN HGMEWVNLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	56	RRRRKKSKGEGSGGGAARKR
2	37	57	RRRRKKSKGEGSGGGAARKRK
3	38	57	RRRRKKSKGEGSGGGAARKR
4	38	58	RRRRKKSKGEGSGGGAARKRK
5	39	59	RRRRKKSKGEGSGGGAARKRK
6	40	60	RRRRKKSKGEGSGGGAARKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	1e-66	HD-ZIP family protein