PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028079589.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family B3
Protein Properties Length: 197aa    MW: 21972.1 Da    PI: 9.826
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028079589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.4e-2526125189
                     EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f k+ltpsdv+ ++rlv+pkk+a  h             ++ ++ ++ ++l+d+  ++W+++++++k+ +++v+tkGWkeFvk+ +Lk +D+v+F
  XP_028079589.1  26 FRKKLTPSDVSGLNRLVIPKKYAVVHfppvrnihaqgisNKRQAVGIPIRLKDKGFKTWNFTYCFWKSNQSFVITKGWKEFVKEARLKPKDVVIF 120
                     89*******************************999888555567889*********************************************** PP

                     EE-SSSE CS
              B3  83 kldgrse 89 
                     +  g +e
  XP_028079589.1 121 Y--GPRE 125
                     *..3333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MVRYTGEGSE ARHLLNDREI SCQELFRKKL TPSDVSGLNR LVIPKKYAVV HFPPVRNIHA  60
QGISNKRQAV GIPIRLKDKG FKTWNFTYCF WKSNQSFVIT KGWKEFVKEA RLKPKDVVIF  120
YGPREGKLAS IIGVECNDSG TSGGLLRSHV GLQPDLQCDF EDQDGEDERG GNEMKKGFKL  180
FGVEIKVGGG NGNGNGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-32RAV family protein