PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079838.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 168aa MW: 18825.1 Da PI: 9.5873

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.9	1.2e-20	17	70	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le+ F+++ +++ +++ +LAk+lgL+ rqV vWFqNrRa++k XP_028079838.1 17 KKKRLTSEQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQVAVWFQNRRARWK 70 56779************************************************9 PP
2	HD-ZIP_I/II	122.3	2.4e-39	16	107	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl++eq+++LE+sF+ee kL+p+rK++la+eLglqprqvavWFqnrRAR+k+kqlE+ y++Lk ++d++++e+++L++ev++L++ +k XP_028079838.1 16 EKKKRLTSEQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQVAVWFQNRRARWKAKQLERLYDSLKLQFDSVSREKQKLQDEVSALKAMVK 107 69**************************************************************************************8887 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MEKNSNCDGG GGGGNEKKKR LTSEQLESLE SSFQEEIKLD PDRKMKLAKE LGLQPRQVAV 60 WFQNRRARWK AKQLERLYDS LKLQFDSVSR EKQKLQDEVS ALKAMVKDQA MKNIQASAGH 120 TEISGEETVE STSVRNRSSS RHGGTSHPQM GHGNSAFNVD ELNPVMPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	46	KKKRLTSEQLESLESSFQEEIKLDPDRKMK
2	65	73	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-44	HD-ZIP family protein