PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079850.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 596aa MW: 67059.4 Da PI: 7.5546

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	471	519	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+ E +lv++v +G g+W+ I r + +Rt ++k++w+++l XP_028079850.1 471 YWSLSEVSKLVEGVSVYGVGRWTEIKRLLFhssANRTSVDLKDKWRNLL 519 6**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MQKMSEDEQG EFKSRILING SKDGMTFNET VNMFGKNPAQ VVEDGSFFPA LEDEVIAVEN 60 LFAEPKCNAL GDDVLGFNSF SQHTCFNFEE CPTVGYGSIK TNNGTLDSNT NLSEKIKEEV 120 CLFFSDGVSG GTDATVLDGK NNLIDTCEDY LLDTEFVDEA SDFNPIKGPY VGNLNLESKS 180 MVSGGRGHGA EISELATTSI PVLQGTCQDS SLLDKMTIDE LHEAFRNMFG RETTVTDEQW 240 LKRHLSFGLQ NLLGPSNENE GKMILSTSDL CSRRVSSPFT AVFNFKRKPR VQHVKRERHD 300 NHVSLKAISS EVRKAVLSFS ELGEKQSVLD TRKRVRKPTR RYIEESLEHN SRHQKRSCVL 360 SSTFSRDKLL HNGSYKLHCH KGFESKPFVS QKEPFKGACI QVPFGQPVHK GHLKKKVHES 420 EGCEDSKLLG SNIDSDMESF STESQDDVSE DDYSAGTKTQ KGKSRRKHHM YWSLSEVSKL 480 VEGVSVYGVG RWTEIKRLLF HSSANRTSVD LKDKWRNLLR ASCPQLQSNR KVESRRKHTS 540 QVIPQSILRR VRELAAIYPY PRERKAQVME TDSPIPDKST CDNLLPLSTA VKCSVR

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MQKMSEDEQG EFKSRILING SKDGMTFNET VNMFGKNPAQ VVEDGSFFPA LEDEVIAVEN  60
LFAEPKCNAL GDDVLGFNSF SQHTCFNFEE CPTVGYGSIK TNNGTLDSNT NLSEKIKEEV  120
CLFFSDGVSG GTDATVLDGK NNLIDTCEDY LLDTEFVDEA SDFNPIKGPY VGNLNLESKS  180
MVSGGRGHGA EISELATTSI PVLQGTCQDS SLLDKMTIDE LHEAFRNMFG RETTVTDEQW  240
LKRHLSFGLQ NLLGPSNENE GKMILSTSDL CSRRVSSPFT AVFNFKRKPR VQHVKRERHD  300
NHVSLKAISS EVRKAVLSFS ELGEKQSVLD TRKRVRKPTR RYIEESLEHN SRHQKRSCVL  360
SSTFSRDKLL HNGSYKLHCH KGFESKPFVS QKEPFKGACI QVPFGQPVHK GHLKKKVHES  420
EGCEDSKLLG SNIDSDMESF STESQDDVSE DDYSAGTKTQ KGKSRRKHHM YWSLSEVSKL  480
VEGVSVYGVG RWTEIKRLLF HSSANRTSVD LKDKWRNLLR ASCPQLQSNR KVESRRKHTS  540
QVIPQSILRR VRELAAIYPY PRERKAQVME TDSPIPDKST CDNLLPLSTA VKCSVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-43	MYB_related family protein