PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079863.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 234aa MW: 26288.5 Da PI: 8.1903

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64	2.2e-20	71	124	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le+ F+++ +++ +++ +LAk+lgL+ rqV vWFqNrRa++k XP_028079863.1 71 KKKRLTSEQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQVAVWFQNRRARWK 124 56779************************************************9 PP
2	HD-ZIP_I/II	121.2	5.4e-39	70	161	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl++eq+++LE+sF+ee kL+p+rK++la+eLglqprqvavWFqnrRAR+k+kqlE+ y++Lk ++d++++e+++L++ev++L++ +k XP_028079863.1 70 EKKKRLTSEQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQVAVWFQNRRARWKAKQLERLYDSLKLQFDSVSREKQKLQDEVSALKAMVK 161 69**************************************************************************************8887 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MDWNMGNLRP PFVSRPENSS SFLYNYNYDY YPGLEMKYPA AAQGSQHAGV AISGMEKNSN 60 CDMGGGGGNE KKKRLTSEQL ESLESSFQEE IKLDPDRKMK LAKELGLQPR QVAVWFQNRR 120 ARWKAKQLER LYDSLKLQFD SVSREKQKLQ DEVSALKAMV KDQAMKNIQA SAGHTEISGE 180 ETVESTSVGN RSSSRHGGTS HPQMAHGNYV FNVDELNPVM PPYCWGAVLP SSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	100	KKKRLTSEQLESLESSFQEEIKLDPDRKMK
2	119	127	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	9e-49	HD-ZIP family protein